METABOLIC PATHWAYS DATABASES
BRENDA, the enzyme database, has comprehensive
information on enzymes and enzymatic reactions. It is one of several databases
nested within the metabolic pathway database set of the SRS5
sequence retreival system at EBI.
KEGG
Metabolic Pathways include graphical pathway maps for all known
metabolic pathways from various organisms. Ortholog group tables, containing
conserved, functional units in a molecular pathway or assembly as well
comparative lists of genes for a given functional unit in different organisms,
are also available.
The WIT Metabolic Reconstruction project produces
metabolic reconstructions for sequenced, or partially sequenced, genomes. It
currently provides a set of over 25 such reconstructions in varying states of
completion. Over 2900 pathway diagrams are available, associated with
functional roles and linked to ORFs.
EcoCyc
describes the genome and the biochemical machinery of E. coli. It provides a
molecular and functional catalog of the E. coli cell to facilitates
system-level understanding. Its Pathway/Genome Navigator user interface visualizes
the layout of genes, of individual biochemical reactions, or of complete
pathways. It also supports computational studies of the metabolism, such as
pathway design, evolutionary studies, and simulations. A related metabolic
database is Metalgen.
Boehringer
Mannheim - Biochemical Pathways is a searchable database of metabolic
pathways, enzymes, substrates and products. Based on a given search, it
produces a graphic representation of the relevant pathway(s) within the context
of an enormous metabolic map. Neighboring metabolic reactions can then be
viewed through links to adjacent maps.