Inter-dependency graph for
the
C-Elegans
specification [1], as visualized in SIV. In this view, the
user chose to
visualize only causal and sync edges. This example shows some
of the characteristics of the specification that are visually
emphasized using this method. For example, note the
DevelopmentalTime20c
node, that
has many outgoing causal edges. This is a triggering LSC that drives
the execution of many other LSCs. One can also note the set of LSCs
named lin3* at the right end of the graph, all specifying the handling
of the LIN-3 protein - an independent process, that is specified by a
set of 7 LSCs, and is triggered by a single event appearing in
the
ACAdoptFate
LSC (as can be seen by the fact that a single edge enters this set of
LSCs, from the
ACAdoptFate
LSC). To the left of these LSCs, one can notice another
quite-independent process, the AC/VU decision, invloving 7 other LSCs
(in the middle of the graph).
In the bottom left corner of the graph there is a cloud of many LSCs
with many edges connecting them. While the exact edges are not quite
prominent in this view, it is clear that this is a set of LSCs that are
strongly inter-dependent. One can now further investigate these LSCs,
and the way they
interact with each other.

A visualization of the C-Elegans specification, in which the user chose
to view also the clock node. Edges adjacent to it were selected to be
visible, yet not layoutable, therefore the layout from the previous
image is maintained.

Aggregation of the C-Elegans specification according to Newman's
community identification algorithm. In this aggregation, the graph is
split into groups such that there are strong inter-dependencies within
the group, and as few as possible between them. In SIV, one can also
aggregate the nodes according to the use cases to which they belong.

Visualization of the the
telecommunication
application [2]. It is
evident that in this specification, there are many
"chain-reactions", i.e., a single LSC that causes a series of LSCs to
open each other.

Zoom in on a subset of the LSCs in the telecommunication application,
showing both causal and sync edges.

Inter-dependency graph for an
ATM
specification. In this graph, causal and violating-cold-forbidden edges
are shown. Note the
clickCancel
node,
representing the LSC that reacts to the user clicking "cancel" -
it may violate a cold forbidden element in several LSCs, thus
cancelling their operation. The specification was written by Liat Nakar.

IDG for the
"Gym
Training System"
specification [3]. Nodes labelled "WOx" represent charts waiting for
external events, and trigerring different tasks, which in turn trigger
different actions (each action represented by a single LSC node). Note
that some actions, e.g. running, can be trigerred by several tasks,
while others e,g, jumping, are task-specific. "Alert" LSCs, e.g.
StormAlert, are in charge of output to external systems.

The "Gym Training System" IDG, aggregated according to Newman's
community identification algorithm. The different tasks and their
actions are clearly identified.

IDG for the "Gym Training System" specification, including both sync
and causal edges. Now action LSCs are grouped closer, while input, task
and output LSCs interact with this "cloud".
References
[1] N.
Kam, D. Harel, H. Kugler, R. Marelly, A. Pnueli, E.J.A. Hubbard and
M.J. Stern, "Formal Modeling of C. elegans Development: A
Scenario-Based Approach",
Proc. 1st Int. Workshop on
Computational Methods in Systems Biology (ICMSB 2003),
Lecture Notes in Computer Science, Vol. 2602, Springer-Verlag, pp.
4-20, Feb. 2003.
(Revised
version in
Modeling in Molecular Biology (G. Ciobanu
and G. Rozenberg, eds.), Springer, Berlin, 2004, pp. 151-173.)
[2] P.
Combes, D. Harel and H. Kugler, "Modeling and Verification of a
Telecommunication Application using Live Sequence Charts and the
Play-Engine Tool",
Software and System Modeling
(SoSyM), to appear. (Preliminary version in
Proc. 3rd Int.
Symp. on Automated Technology for Verification and Analysis (ATVA
'05), Lecture Notes in Computer Science, Vol 3707, Springer-Verlag,
2005, 414-428.)
[3] D. Harel and Y. Setty,
"Generic Reactive
Animation: Realistic Modeling of Complex Natural Systems",
Lecture Notes in Bioinformatics,
to appear, 2008. See also
website.